3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13284

Details:

PFam ID : PF13284

PFam Domain Description : Domain of unknown function (DUF4072)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 39

Average sequence length: 46.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13284	C9NRN3_9VIBR_829_1009	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13284	B9Z1G4_9NEIS_8_54	94.7

Sequence based PCA Plot of the family - PF13284 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay