3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13282

Details:

PFam ID : PF13282

PFam Domain Description : Domain of unknown function (DUF4070)

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 138

Average sequence length: 138.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13282	A4WZ89_RHOS5_377_513	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13282	C4XKJ3_DESMR_360_518	100

Sequence based PCA Plot of the family - PF13282 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=30 Length=8
Motif3 Start=21 Length=8
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay