3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13280

Details:

PFam ID : PF13280

PFam Domain Description : WYL domain

Number of Sequence in 50% Dataset : 994

Number of Sequence in Full Dataset : 2636

Average sequence length: 157.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13280	B8HYX7_CYAP4_473_707	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13280	C4G3K9_ABIDE_3_121	99.9

Sequence based PCA Plot of the family - PF13280 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=68 Length=8
Motif2 Start=31 Length=8
Motif3 Start=44 Length=8
Motif4 Start=171 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay