3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13279

Details:

PFam ID : PF13279

PFam Domain Description : Thioesterase-like superfamily

Number of Sequence in 50% Dataset : 448

Number of Sequence in Full Dataset : 1906

Average sequence length: 127.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13279	C3RYK9_9BACT_82_181	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13279	E7SFX8_SHIDY_9_96	99.3

Sequence based PCA Plot of the family - PF13279 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=23
Motif2 Start=71 Length=8
Motif3 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay