3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13277

Details:

PFam ID : PF13277

PFam Domain Description : YmdB-like protein

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 406

Average sequence length: 249.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13277	C8PS63_9SPIO_224_292	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13277	B0VGJ6_CLOAI_4_265	100

Sequence based PCA Plot of the family - PF13277 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=17
Motif2 Start=1 Length=11
Motif3 Start=82 Length=8
Motif4 Start=54 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay