3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13276

Details:

PFam ID : PF13276

PFam Domain Description : HTH-like domain

Number of Sequence in 50% Dataset : 107

Number of Sequence in Full Dataset : 2289

Average sequence length: 59.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13276	D7UMT3_LISMO_16_86	34.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13276	C4XP60_DESMR_58_110	99.4

Sequence based PCA Plot of the family - PF13276 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=62 Length=8
Motif3 Start=49 Length=11
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay