3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13271

Details:

PFam ID : PF13271

PFam Domain Description : Domain of unknown function (DUF4062)

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 197

Average sequence length: 85.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13271	C7RN04_ACCPU_5_85	68.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13271	A8SY34_9FIRM_27_140	100

Sequence based PCA Plot of the family - PF13271 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=58 Length=8
Motif2 Start=73 Length=8
Motif3 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay