3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13270

Details:

PFam ID : PF13270

PFam Domain Description : Domain of unknown function (DUF4061)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 34

Average sequence length: 77.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13270	A2AE01_MOUSE_85_104	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13270	E9C937_9EUKA_32_135	100

Sequence based PCA Plot of the family - PF13270 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay