3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13264

Details:

PFam ID : PF13264

PFam Domain Description : Domain of unknown function (DUF4055)

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 71

Average sequence length: 135.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13264	E1AC07_9CAUD_276_422	60.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13264	E0MRJ9_9RHOB_259_413	100

Sequence based PCA Plot of the family - PF13264 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=21 Length=27
Motif2 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay