3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13248

Details:

PFam ID : PF13248

PFam Domain Description : zinc-ribbon domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 882

Average sequence length: 25.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13248	B0TRZ3_SHEHH_1_50	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13248	A2BKR2_HYPBU_155_181	90.1

Sequence based PCA Plot of the family - PF13248 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=14 Length=8
Motif2 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay