3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13247

Details:

PFam ID : PF13247

PFam Domain Description : 4Fe-4S single cluster domain

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 1754

Average sequence length: 92.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13247	B0TRZ3_SHEHH_1_50	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13247	Q2W7X9_MAGSA_49_179	100

Sequence based PCA Plot of the family - PF13247 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=20 Length=11
Motif3 Start=41 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay