3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13242

Details:

PFam ID : PF13242

PFam Domain Description : HAD-hyrolase-like

Number of Sequence in 50% Dataset : 252

Number of Sequence in Full Dataset : 2635

Average sequence length: 74.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13242	A7VGL6_9CLOT_144_238	90.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13242	C1F2T4_ACIC5_116_184	100

Sequence based PCA Plot of the family - PF13242 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=67 Length=8
Motif3 Start=48 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay