3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13240

Details:

PFam ID : PF13240

PFam Domain Description : zinc-ribbon domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 507

Average sequence length: 22.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13240	F2L5T0_9CREN_4_30	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13240	A9KRX3_CLOPH_2_25	98.6

Sequence based PCA Plot of the family - PF13240 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay