3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13239

Details:

PFam ID : PF13239

PFam Domain Description : 2TM domain

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 268

Average sequence length: 80.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13239	D4V5Y8_BACVU_23_81	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13239	A2BUP0_PROM5_11_82	100

Sequence based PCA Plot of the family - PF13239 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=14
Motif2 Start=14 Length=8
Motif3 Start=5 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay