3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13238

Details:

PFam ID : PF13238

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 288

Number of Sequence in Full Dataset : 869

Average sequence length: 137.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13238	D5X9F3_THEPJ_40_68	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13238	A9UYU6_MONBE_127_244	100

Sequence based PCA Plot of the family - PF13238 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay