3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13236

Details:

PFam ID : PF13236

PFam Domain Description : Clustered mitochondria

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 151

Average sequence length: 203.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13236	A9SFG8_PHYPA_324_477	89.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13236	E3K6B8_PUCGT_456_737	100

Sequence based PCA Plot of the family - PF13236 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=119 Length=8
Motif3 Start=263 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay