3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13233

Details:

PFam ID : PF13233

PFam Domain Description : Complex1_LYR-like

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 185

Average sequence length: 101.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13233	E1ZBK1_9CHLO_6_101	53.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13233	E1ZBK1_9CHLO_6_101	45

Sequence based PCA Plot of the family - PF13233 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay