3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13232

Details:

PFam ID : PF13232

PFam Domain Description : Complex1_LYR-like

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 121

Average sequence length: 65.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13232	Q4RXF8_TETNG_5_88	23.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13232	E4UP93_ARTGP_32_92	94.1

Sequence based PCA Plot of the family - PF13232 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay