3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13231

Details:

PFam ID : PF13231

PFam Domain Description : Dolichyl-phosphate-mannose-protein mannosyltransferase

Number of Sequence in 50% Dataset : 1401

Number of Sequence in Full Dataset : 2652

Average sequence length: 159.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13231	D5EMS2_CORAD_70_165	71.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13231	A3ZW93_9PLAN_61_255	100

Sequence based PCA Plot of the family - PF13231 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay