3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13230

Details:

PFam ID : PF13230

PFam Domain Description : Glutamine amidotransferases class-II

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 524

Average sequence length: 238.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13230	E6JRR1_9SPIO_118_208	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13230	C6M743_NEISI_1_176	100

Sequence based PCA Plot of the family - PF13230 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=229 Length=8
Motif2 Start=110 Length=8
Motif3 Start=69 Length=8
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay