3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13228

Details:

PFam ID : PF13228

PFam Domain Description : Domain of unknown function (DUF4037)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 98

Average sequence length: 99.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13228	E6JRR1_9SPIO_118_208	38.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13228	C0W9F8_9FIRM_126_226	100

Sequence based PCA Plot of the family - PF13228 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8
Motif4 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay