3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13224

Details:

PFam ID : PF13224

PFam Domain Description : Domain of unknown function (DUF4032)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 95

Average sequence length: 144.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13224	B8E0A2_DICTD_144_190	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13224	D0LWJ5_HALO1_229_404	100

Sequence based PCA Plot of the family - PF13224 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=11
Motif2 Start=24 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay