3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13208

Details:

PFam ID : PF13208

PFam Domain Description : Domain of unknown function (DUF4016)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 57

Average sequence length: 186.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13208	E1HS95_ECOLX_102_305	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13208	E1HS95_ECOLX_102_305	100

Sequence based PCA Plot of the family - PF13208 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=63 Length=8
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay