3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13207

Details:

PFam ID : PF13207

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 574

Number of Sequence in Full Dataset : 1541

Average sequence length: 155.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13207	A0C3C7_PARTE_368_692	99.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13207	D5U3Y7_BRAM5_145_263	99.8

Sequence based PCA Plot of the family - PF13207 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=16 Length=8
Motif3 Start=1 Length=14
Motif4 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay