3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13206

Details:

PFam ID : PF13206

PFam Domain Description : Trypanosomal VSG domain

Number of Sequence in 50% Dataset : 156

Number of Sequence in Full Dataset : 218

Average sequence length: 333.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13206	Q380X1_9TRYP_2_85	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13206	Q57U36_9TRYP_9_426	100

Sequence based PCA Plot of the family - PF13206 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=36 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay