3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13205

Details:

PFam ID : PF13205

PFam Domain Description : Bacterial Ig-like domain

Number of Sequence in 50% Dataset : 508

Number of Sequence in Full Dataset : 960

Average sequence length: 104.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13205	Q8NKM1_9CREN_1_64	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13205	Q8KAY5_CHLTE_341_457	99.8

Sequence based PCA Plot of the family - PF13205 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=33
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay