3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13202

Details:

PFam ID : PF13202

PFam Domain Description : EF hand

Number of Sequence in 50% Dataset : 1135

Number of Sequence in Full Dataset : 2338

Average sequence length: 23.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13202	A4AT33_MARSH_3058_3197	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13202	A3TVS8_9RHOB_71_96	68

Sequence based PCA Plot of the family - PF13202 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay