3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13199

Details:

PFam ID : PF13199

PFam Domain Description : Glycosyl hydrolase family 66

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 48

Average sequence length: 479.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13199	A7HFL9_ANADF_43_734	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13199	C7Q3N8_CATAD_72_688	100

Sequence based PCA Plot of the family - PF13199 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=4 Length=8
Motif2 Start=60 Length=8
Motif3 Start=23 Length=8
Motif4 Start=129 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay