3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13194

Details:

PFam ID : PF13194

PFam Domain Description : Domain of unknown function (DUF4010)

Number of Sequence in 50% Dataset : 104

Number of Sequence in Full Dataset : 217

Average sequence length: 204.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13194	Q46MW2_CUPPJ_186_235	83.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13194	C1AEG9_GEMAT_183_414	100

Sequence based PCA Plot of the family - PF13194 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=140 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay