3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13193

Details:

PFam ID : PF13193

PFam Domain Description : Domain of unknown function (DUF4009)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 6712

Average sequence length: 36.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13193	A0QD26_MYCA1_444_467	29.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13193	D9YCM4_9DELT_1004_1046	93.5

Sequence based PCA Plot of the family - PF13193 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay