3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13192

Details:

PFam ID : PF13192

PFam Domain Description : Thioredoxin domain

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 905

Average sequence length: 77.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13192	C4QBE3_SCHMA_8_146	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13192	E3GHZ0_EUBLK_26_101	100

Sequence based PCA Plot of the family - PF13192 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=3 Length=20
Motif3 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay