3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13191

Details:

PFam ID : PF13191

PFam Domain Description : AAA ATPase domain

Number of Sequence in 50% Dataset : 1481

Number of Sequence in Full Dataset : 2917

Average sequence length: 169.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13191	C4QBE3_SCHMA_8_146	99.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13191	Q552L8_DICDI_35_132	99.6

Sequence based PCA Plot of the family - PF13191 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=33 Length=8
Motif3 Start=217 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay