3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13189

Details:

PFam ID : PF13189

PFam Domain Description : Cytidylate kinase-like family

Number of Sequence in 50% Dataset : 190

Number of Sequence in Full Dataset : 620

Average sequence length: 167.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13189	C6LLR0_9FIRM_1_56	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13189	D8DYS3_PREBR_8_105	99.8

Sequence based PCA Plot of the family - PF13189 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=134 Length=8
Motif2 Start=119 Length=8
Motif3 Start=197 Length=8
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay