3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13187

Details:

PFam ID : PF13187

PFam Domain Description : 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family

Number of Sequence in 50% Dataset : 247

Number of Sequence in Full Dataset : 1397

Average sequence length: 57.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13187	B8FL31_DESAA_261_379	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13187	E0NNW8_9FIRM_273_374	100

Sequence based PCA Plot of the family - PF13187 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=104 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay