3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13186

Details:

PFam ID : PF13186

PFam Domain Description : Domain of unknown function (DUF4008)

Number of Sequence in 50% Dataset : 542

Number of Sequence in Full Dataset : 1631

Average sequence length: 67.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13186	E1WZW5_BACMS_8_118	99.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13186	A3JB48_9ALTE_175_265	99.9

Sequence based PCA Plot of the family - PF13186 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=103 Length=8
Motif3 Start=13 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay