3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13184

Details:

PFam ID : PF13184

PFam Domain Description : NusA-like KH domain

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 745

Average sequence length: 68.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13184	A6G4Y4_9DELT_315_443	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13184	D3FJK2_MYCGF_238_315	99.7

Sequence based PCA Plot of the family - PF13184 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=49 Length=8
Motif2 Start=63 Length=11
Motif3 Start=2 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay