3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13183

Details:

PFam ID : PF13183

PFam Domain Description : 4Fe-4S dicluster domain

Number of Sequence in 50% Dataset : 250

Number of Sequence in Full Dataset : 2889

Average sequence length: 76.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13183	A6G4Y4_9DELT_315_443	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13183	ACDA1_METTE_391_474	100

Sequence based PCA Plot of the family - PF13183 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=4 Length=17
Motif3 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay