3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13181

Details:

PFam ID : PF13181

PFam Domain Description : Tetratricopeptide repeat

Number of Sequence in 50% Dataset : 2638

Number of Sequence in Full Dataset : 3843

Average sequence length: 32.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13181	D2QBQ4_SPILD_126_194	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13181	Q233M7_TETTH_933_967	13

Sequence based PCA Plot of the family - PF13181 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay