3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13177

Details:

PFam ID : PF13177

PFam Domain Description : DNA polymerase III, delta subunit

Number of Sequence in 50% Dataset : 294

Number of Sequence in Full Dataset : 2326

Average sequence length: 161.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13177	Q3EP45_BACTI_2_46	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13177	E7I3M6_ECOLX_9_95	100

Sequence based PCA Plot of the family - PF13177 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=201 Length=11
Motif3 Start=241 Length=11
Motif4 Start=214 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay