3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13176

Details:

PFam ID : PF13176

PFam Domain Description : Tetratricopeptide repeat

Number of Sequence in 50% Dataset : 574

Number of Sequence in Full Dataset : 962

Average sequence length: 35.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13176	D4J4U9_9FIRM_17_441	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13176	B2IZL3_NOSP7_887_922	63

Sequence based PCA Plot of the family - PF13176 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=11
Motif2 Start=2 Length=8
Motif3 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay