3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13175

Details:

PFam ID : PF13175

PFam Domain Description : AAA ATPase domain

Number of Sequence in 50% Dataset : 271

Number of Sequence in Full Dataset : 493

Average sequence length: 228.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13175	D4J4U9_9FIRM_17_441	96.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13175	C5CWR2_VARPS_3_68	95.7

Sequence based PCA Plot of the family - PF13175 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=6 Length=8
Motif2 Start=33 Length=8
Motif3 Start=376 Length=8
Motif4 Start=350 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay