3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13173

Details:

PFam ID : PF13173

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 209

Number of Sequence in Full Dataset : 1389

Average sequence length: 126.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13173	E2NA20_9BACE_1_97	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13173	E4NRV2_HALBP_57_211	100

Sequence based PCA Plot of the family - PF13173 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=17
Motif2 Start=113 Length=8
Motif3 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay