3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13167

Details:

PFam ID : PF13167

PFam Domain Description : GTP-binding GTPase N-terminal

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 1099

Average sequence length: 92.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13167	A3XNN9_LEEBM_10_701	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13167	A6F7U6_9GAMM_24_144	100

Sequence based PCA Plot of the family - PF13167 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=17
Motif2 Start=1 Length=8
Motif3 Start=46 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay