3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13166

Details:

PFam ID : PF13166

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 196

Number of Sequence in Full Dataset : 303

Average sequence length: 518.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13166	A3XNN9_LEEBM_10_701	94.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13166	Q39PH1_BURS3_90_859	100

Sequence based PCA Plot of the family - PF13166 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=490 Length=8
Motif2 Start=2 Length=8
Motif3 Start=600 Length=8
Motif4 Start=212 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay