3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13155

Details:

PFam ID : PF13155

PFam Domain Description : Toprim-like

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 704

Average sequence length: 94.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13155	O32778_9LACT_119_207	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13155	D4CCV7_9CLOT_223_318	100

Sequence based PCA Plot of the family - PF13155 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=55 Length=8
Motif3 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay