3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13147

Details:

PFam ID : PF13147

PFam Domain Description : Amidohydrolase

Number of Sequence in 50% Dataset : 636

Number of Sequence in Full Dataset : 3719

Average sequence length: 306.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13147	B1X3M1_PAUCH_200_402	85.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13147	E8RF55_9DELT_52_362	98.1

Sequence based PCA Plot of the family - PF13147 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=27
Motif2 Start=91 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay