3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13117

Details:

PFam ID : PF13117

PFam Domain Description : Cag pathogenicity island protein Cag12

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 33

Average sequence length: 100.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13117	C4K5Z1_HAMD5_7_115	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13117	E0WK08_HELPY_12_124	100

Sequence based PCA Plot of the family - PF13117 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=9 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay