3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13109

Details:

PFam ID : PF13109

PFam Domain Description : AsmA-like C-terminal region

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 44

Average sequence length: 203.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13109	Q4E703_9RICK_5_212	40.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13109	D5V1Y9_ARCNC_694_921	100

Sequence based PCA Plot of the family - PF13109 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay