3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13103

Details:

PFam ID : PF13103

PFam Domain Description : TonB C terminal

Number of Sequence in 50% Dataset : 247

Number of Sequence in Full Dataset : 587

Average sequence length: 85.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13103	D8ID12_BRAP9_198_295	74.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13103	E1X120_BACMS_213_314	100

Sequence based PCA Plot of the family - PF13103 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay