3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13100

Details:

PFam ID : PF13100

PFam Domain Description : OstA-like protein

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 150

Average sequence length: 130.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13100	D3PBT6_DEFDS_23_106	67.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13100	D5H8X2_SALRM_83_250	100

Sequence based PCA Plot of the family - PF13100 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=29 Length=8
Motif3 Start=20 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay